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APE v2.0.46

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文件类型 内容:
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.exe
语言 内容:
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英语
软件类型 内容:
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国外软件
授权方式 内容:
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公开
操作系统 内容:
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Win9x/NT/2000/XP/
软件等级 内容:
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5
官方网址 内容:
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http://biologylabs.utah.edu/jo
演示网址 内容:
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http://biologylabs.utah.edu/jorgensen/wayned/ape/
软件大小 内容:
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5MB
软件地址 内容:
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  • 官方下载
  • 旧版本下载
  • 详细介绍 内容:
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    • Runs in Windows (XP, Vista and 7) and Mac (OS X v10.5 and above)
    • Highlights restriction sites in the editing window
    • Accurately reflects Dam/Dcm blocking of enzyme sites
    • Highlights text using pre-defined and custom feature libraries
    • Shows translation, Tm, %GC, ORF of selected DNA in real-time
    • Reads DNA Strider, Fasta, Genbank and EMBL files
    • Saves files as DNA Strider-compatible or Genbank file format
    • Highlights and draws graphic maps using feature annotations from genbank and embl files
    • Directly BLASTs selected sequence at NCBI or wormbase

     

    • Text map shows DNA sequence, translation, and features as text-based graphics

     

    • Creates graphic restriction maps- linear or circular with features indicated
    • Connects graphic and text features with hyperlink double click
    • Saves graphics as encapsulated postscript or scalable vector graphics
    • Copy and save graphics as Windows metafiles (MS Windows only)

     

    • Virtual restriction digest
    • Draws pre-defined and user-defined DNA ladders
    • Connects bands to text by double-click

     

    • Reads ABI sequencing trace files
    • Sequences in ABI traces can be aligned directly to a reference sequence, with the alignment hyperlinked back to te trace.

     

    • Selects sites matching multiple criteria (union/intersection- cut frequency, site type) in all open windows
    • Selects sites that cut more often in one sequence than another (for snip-SNP detection or diagnostic digests)
    • Has user defined enzyme grouping to distiguish eg. enzymes currently in stock.
    • Allows users to define new enzymes by name and recognition site
    • Imports DNA Strider format files (simple enzyme, site lists) available from REBASE

    Other Features:

     

    • Most analysis windows are hyperlinked to their corresponding sequences, including:
      • Graphic Maps
      • Text maps
      • Virtual Digests
      • Alignments (including ABI sequences)
      • Silent Sites
      • Translation
      • Primer Find
    • Uses custom feature definition libraries, which allow:
      • Quick annotation of sequence
      • Quick searching and highlighting of all available primers that you (or others) have that hybridize to a sequence
      • Sequence to be annotated and visualized in multiple ways quickly and efficiently
      • Graphic maps that show primer binding sites and all interesting sequence features
    • Translates sequences with optional DNA alignment
    • Finds potential primers matching user criteria (length, Tm, %GC, self/other complementarity)
    • Aligns two DNA sequences (or any combination of sequence and ABI trace), with the alignment hyperlinked to the original sequence
    • Finds translationally silent restriction sites
    • Draws graphic ORF maps
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