详细介绍 内容:
模板调用标记:
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Runs in Windows (XP, Vista and 7) and Mac (OS X v10.5 and above)
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Highlights restriction sites in the editing window
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Accurately reflects Dam/Dcm blocking of enzyme sites
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Highlights text using pre-defined and custom feature libraries
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Shows translation, Tm, %GC, ORF of selected DNA in real-time
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Reads DNA Strider, Fasta, Genbank and EMBL files
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Saves files as DNA Strider-compatible or Genbank file format
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Highlights and draws graphic maps using feature annotations from genbank and embl files
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Directly BLASTs selected sequence at NCBI or wormbase
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Text map shows DNA sequence, translation, and features as text-based graphics
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Creates graphic restriction maps- linear or circular with features indicated
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Connects graphic and text features with hyperlink double click
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Saves graphics as encapsulated postscript or scalable vector graphics
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Copy and save graphics as Windows metafiles (MS Windows only)
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Virtual restriction digest
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Draws pre-defined and user-defined DNA ladders
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Connects bands to text by double-click
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Reads ABI sequencing trace files
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Sequences in ABI traces can be aligned directly to a reference sequence, with the alignment hyperlinked back to te trace.
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Selects sites matching multiple criteria (union/intersection- cut frequency, site type) in all open windows
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Selects sites that cut more often in one sequence than another (for snip-SNP detection or diagnostic digests)
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Has user defined enzyme grouping to distiguish eg. enzymes currently in stock.
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Allows users to define new enzymes by name and recognition site
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Imports DNA Strider format files (simple enzyme, site lists) available from REBASE
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Other Features:
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Most analysis windows are hyperlinked to their corresponding sequences, including:
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Graphic Maps
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Text maps
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Virtual Digests
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Alignments (including ABI sequences)
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Silent Sites
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Translation
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Primer Find
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Uses custom feature definition libraries, which allow:
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Quick annotation of sequence
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Quick searching and highlighting of all available primers that you (or others) have that hybridize to a sequence
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Sequence to be annotated and visualized in multiple ways quickly and efficiently
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Graphic maps that show primer binding sites and all interesting sequence features
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Translates sequences with optional DNA alignment
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Finds potential primers matching user criteria (length, Tm, %GC, self/other complementarity)
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Aligns two DNA sequences (or any combination of sequence and ABI trace), with the alignment hyperlinked to the original sequence
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Finds translationally silent restriction sites
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Draws graphic ORF maps
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